NicheNet: predict active ligand-target links between interacting cells

igraph R package

Open source code for AlphaFold 2.

AlphaFold 3 inference pipeline.

一款浏览器插件，支持在各种论文网站显示会议、期刊等级。支持的排名有：西南财经大学swufe，中央财经大学cufe，复旦大学fdu，上海交通大学sjtu，西南交通大学swjtu，对外经济贸易大学uibe，西安电子科技大学xdu，SCI，SCI影响因子，中国科学引文数据库cscd，北大中文核心pku。支持的网站有：谷歌学术，微软学术，知网，Springer，IEEExplore，ACM，DBLP…

Repo of code used to analyze data from Millet, Ledo et al., "An Exhausted-Like Microglial Population Accumulates in Aged and APOE4 Genotype Alzheimer’s Brains", published in Immunity (2023).

❗ This is a read-only mirror of the CRAN R package repository. easybio — Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit. Homepage: https://github.com/person-c/easybio Repo…

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

scPred package for cell type prediction from scRNA-seq data

scAB: Multiresolution dissection of phenotype-associated cell states

scAB detects multiresolution cell states with clinical significance

Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit

R tools for analysis and visualization of single-cell subclustering data

Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Library for the analysis of networks

plotthis is an R package that is built upon ggplot2 and other plotting packages.

A toolkit for single-cell immune profiling

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.

CellNOptR add-on that permits to extend a network with links derived from literature

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment of two gene sets.

Reference sequences and annotation files for commonly analyzed organisms

Enrichment Networks for Pathway Enrichment Analysis

A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data

SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples