Merge pull request #3 from treangenlab/update_my_recipe

update argparse part for conda bulild pass

meth_phaser_parallel

@@ -61,47 +61,48 @@ def parse_arg(argv):
  # metavar="",
  )
  parser.add_argument(
- "-t", "--threads", type=int, help="threads", default=1, metavar=""
+ "-t", "--threads", type=int, help="threads", default=1, 
+ # metavar=""
  )
  parser.add_argument(
  "-ml",
  "--max_len",
  type=int,
  help="maximum homozygous region length for phasing, default: -1 (ignore the largest homozygous region, centromere), input -2 for not skipping anything",
  default=-1,
- metavar="",
+ # metavar="",
  )
  parser.add_argument(
  "-c",
  "--cut_off",
  type=float,
  help="the minimum percentage of vote to determine a read's haplotype",
  default=0.65,
- metavar="",
+ # metavar="",
  )
  parser.add_argument(
  "-a",
  "--assignment_min",
  type=int,
  help="minimum assigned read number for ranksum test",
  default=2,
- metavar="",
+ # metavar="",
  )
  parser.add_argument(
  "-o",
  "--output_dir",
  type=str,
  help="output_directory",
  default="work/",
- metavar="",
+ # metavar="",
  )
  parser.add_argument(
  "-k",
  "--k_iterations",
  type=int,
  help="use at most k iterations, use -1 for unlimited iterations.",
  default="10",
- metavar="",
+ # metavar="",
  )
 
  if len(argv) == 0: