Merge pull request #6 from treangenlab/main_orphan

Main orphan
treangenlab · May 18, 2023 · d71d38f · d71d38f
2 parents 70cff08 + 59a8e03
commit d71d38f
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/meth_phaser_post_processing b/meth_phaser_post_processing
@@ -306,6 +306,7 @@ def get_altered_vcf(original_vcf, output_vcf, block_relationship_dfs):
                                 # print(split_rec, start_loc)
                                 split_rec[-1] = split_rec[-1].replace(start_loc, get_altered_block_start_loc(current_chrom_final_block, int(start_loc)))  # type: ignore
                                 rec = "\t".join(split_rec)
+                                rec = f"{rec}\n"
                             altered_vcf_file.writelines(rec.replace("1|0", "0|1"))
                         elif "0|1" in rec:
                             if "PS" in rec.split("\t")[-2]:
@@ -315,6 +316,7 @@ def get_altered_vcf(original_vcf, output_vcf, block_relationship_dfs):
                                 # print(split_rec, start_loc)
                                 split_rec[-1] = split_rec[-1].replace(start_loc, get_altered_block_start_loc(current_chrom_final_block, int(start_loc)))  # type: ignore
                                 rec = "\t".join(split_rec)
+                                rec = f"{rec}\n"
                             altered_vcf_file.writelines(rec.replace("0|1", "1|0"))
                         else:
                             altered_vcf_file.writelines(rec)