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Update README.md
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Fu-Yilei authored May 3, 2023
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# Meth Phaser
# MethPhaser

Requirement:
1. pysam>=0.20.0
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Known Issue:
1. Does not phase reads before the first phased block and after the last phased block
2. Multiprocessing threads should be smaller than the total block number on the chromosome. e.g., MethPhaser cannot use 3 threads to phase 3 blocks, since the number of the gaps among 3 blocks is 2.
2. Multiprocessing threads should be smaller than the total block number on the chromosome. e.g., MethPhaser cannot use 3 threads to phase 3 blocks, because the number of the gaps among 3 blocks is 2.
3. MethPhaser sometimes ignore some very short reads (about 0.1% reads). Probably because of pysam.


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