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An R package with wrappers and pipelines for single cell RNA-seq analysis

Repository for data science book

R package to easily generate "V-plots" of paired-end sequencing data over regions of interest

Accelerated BLAST compatible local sequence aligner.

All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs

an R package for deep mining gene co-expression networks in multi-trait expression data

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

inferring cell-cell communication from scRNA-seq of ligand-receptor

A toolkit for working with ATAC-seq data.

Issues found on WSL

scRNAseq analysis of the enamel knot

ENCODE ChIP-seq pipeline

Collection of R functions used in the Hochwagen Lab

ggplot2: elegant graphics for data analysis

Hierarchical, iterative clustering for analysis of transcriptomics data in R

CCR's research computing documentation

ENCODE ATAC-seq pipeline

scRNAseq Tooth Atlas

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

HOWTO setup and use the DWService for remote computer control

Shiny Interactive Web Apps for Single-Cell Data

Jam Base Methods for R

SeqAn's official repository.

Data science in R notes

A python package and a set of shell commands to handle GTF files