Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
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Updated
Sep 20, 2023 - Python
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Rapid determination of appropriate reference genomes.
Snakemake-based workflow for detecting structural variants in genomic data
vSNP -- validate SNPs
A pipeline for Bacterial Whole genome sequence data analysis
Generate Lorenz plots and Coverage plots directly from BAM files
Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape
Snakemake-based workflow for generating artificial genomes with structural variants
vSNP -- validate SNPs
Long read structural variants in rare disease cohort
Genomic data manipulation tool
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis
In this repository I backup the pipelines I write for the project I am involved
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