wgbs
Here are 33 public repositories matching this topic...
Snakemake Workflow For Running Biscuit https://github.com/huishenlab/biscuit
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Mar 25, 2024 - Python
Cluster-based analysis of CpG methylation
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Jan 11, 2024 - Python
An R package for weighted region comethylation network analysis
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Oct 14, 2023 - R
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
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Oct 10, 2023 - R
The DKFZ alignment workflow plugin originally developed at the eilslabs
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Oct 5, 2023 - Python
This repository contains data and functions related to computational epigenomics data analysis.
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Sep 13, 2023 - HTML
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
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Jul 7, 2023 - R
R package to impute methylation within WGBS using machine learning
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Mar 9, 2023 - R
TFregulomeR reveals transcription factors’ context-specific features and functions
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Apr 18, 2022 - R
TFregulomeR reveals transcription factors’ context-specific features and functions
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Apr 17, 2022 - R
Pipeline for BS-Seq data based on snakemake
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Apr 1, 2022 - Python
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
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Mar 28, 2022 - Shell
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
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Feb 15, 2022 - Python
Analysis of DNA methylation data by whole-genome bisulfite sequencing in umbilical cord blood from ASD and TD subjects in the MARBLES and EARLI studies
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Jan 12, 2022 - R
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
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Sep 24, 2021 - Python
mix of python, bash and R functions, scripts and notebooks to benchmark the use of methylation as proxy to infer TF binding
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Sep 10, 2021 - Jupyter Notebook
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