wgbs
Here are 33 public repositories matching this topic...
Using Snakemake to implement ENCODE WGBS pipeline
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Oct 2, 2018 - Python
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Oct 29, 2018 - R
Analysis scripts for identification and visualization of Wilson disease-associated DNA methylation changes in human liver and blood
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Jun 24, 2019 - R
Analysis of DNA methylation and gene expression for thioredoxin system genes in Wilson disease
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Jun 24, 2019 - R
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
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Sep 26, 2019 - R
An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me
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Feb 28, 2020 - Shell
A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
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May 15, 2020 - R
Differential methylation: Easy, Fast, Identification and ANnoTation
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Dec 18, 2020 - Shell
Analyses for the manuscript "Prenatal PCB exposure alters a shared neurodevelopmental DNA methylation profile in mouse placenta and fetal brain".
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Aug 17, 2021 - R
mix of python, bash and R functions, scripts and notebooks to benchmark the use of methylation as proxy to infer TF binding
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Sep 10, 2021 - Jupyter Notebook
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
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Sep 24, 2021 - Python
Analysis of DNA methylation data by whole-genome bisulfite sequencing in umbilical cord blood from ASD and TD subjects in the MARBLES and EARLI studies
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Jan 12, 2022 - R
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
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Feb 15, 2022 - Python
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
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Mar 28, 2022 - Shell
Pipeline for BS-Seq data based on snakemake
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Apr 1, 2022 - Python
TFregulomeR reveals transcription factors’ context-specific features and functions
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Apr 17, 2022 - R
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