Extracting anatomy-specific gene expression in humans from Bgee
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Updated
Mar 8, 2016 - Jupyter Notebook
Extracting anatomy-specific gene expression in humans from Bgee
Generating expression signatures for disease using STARGEO
Pipeline for low-level RNA-Seq data processing
Gene sets and functions for working with them.
A utility to call polyA sites based on genome alignments in SAM format
A multi-response Gaussian model capable of accurately estimating the composition of blood samples from their gene expression profiles. Fit on Affymetrix Gene ST gene expression profiles using the glmnet R package.
depiction of read distribution for outlier genes
Reproducible scripts for (P. Carella et al) manuscript
Materials used during #NGSchool2017
project for Cambridge Bioinformatics Hackathon, 25-27 Sept 2017
Database of pairwise consensuses for miR-mRNA target interactions
Example workflow for cancer genomics analysis using TCGA data
[KTH/HT17] BB2491 - Analysis of Data from High-throughput Molecular Biology Experiments (BigData) | Diary: cf. wiki
Code, data, and figures for an experimental pathogen exposure study using wood frogs and American bullfrogs
Integration of Asthma-Related Transcriptomic Datasets
Improved plotting outputs for mixOmics models, using `ggplot2`
Analysis scripts for the Vertesy 2018 paper: "Parental haplotype specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells"
Additional files for our research article (DOI: 10.3389/fgene.2018.00297)
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