Convert SV VCFs to BED, a wrapper for bcftools query
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Updated
Jul 20, 2019 - Python
Convert SV VCFs to BED, a wrapper for bcftools query
Supporting material for H3Africa Structural and Copy Number Variant paper: summary data and scripts
Validate SV with Split-Reads
Website for the Ewing Group.
Finding structural variations in a genome after comparison with a reference genome.
Runs several variant callers that align an assembly to a reference
Code used to discover structural variants, SNP, Indels that were applied to rare variant analysis
Quantify structural variants in clonal Daphnia genomes
Documentation of FuSViz app
Predict mechanism underlying structural variants
Detection of inversions in P. falciparum from long read assemblies.
A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data
Guide to installing, using, and interpreting structural variant finders. Includes example scripts for running tools on UCLA's Hoffman2 and a description of how to use the machine learning combination method FusorSV.
Simulate ecDNA structures with user-specified properties.
A tool to aggregate results of fusion produced by Genefuse and Lumpy and calculate allelic frequency
MAVIS workflow, annotation of structural variants
Structural Variants in cell-free tumor DNA
bionano annovar annotation
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