Easily construct the ML species tree with single-copy gene shared by different species.
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Updated
Oct 26, 2018 - Python
Easily construct the ML species tree with single-copy gene shared by different species.
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
Dynamic Programming (DP) based software Software to Estimate Species Tree by maximizing triplet agreement.
This pipeline helps to build a phylogenetic tree using the BUSCO results over a group of species/genomes/proteomes/transcriptomes.
This is a Snakemake workflow that calculates maximum-likelihood gene trees with IQ-TREE and 100 bootstrap replicates for each tree. Then, consensus trees are produced and combined to infer a species tree following the multispecies coalescent model with ASTRAL. Imported from my GitLab.
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