Code for analyzing 16S rRNA and metagenomic data, SNP data, and immune data from pigs.
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Updated
Jul 30, 2024 - R
Code for analyzing 16S rRNA and metagenomic data, SNP data, and immune data from pigs.
An R package for detecting copy number variants from SNPs data
An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.
An Efficient Swiss Army Knife for Population Genomic Analyses in R
Find causal cell-types underlying complex trait genetics
🍸R version of SConES, a systems-biology approach to GWAS.
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
Scripts and config files for assembly and SNP design of genomics of Polynesian rats
Scripts and data associated with "Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod"
This repository contains a workflow to perform genome-environment association analysis with redundancy analysis.
DNA Imputation tool for Generis.
🔖 Get SNP proxies from the 1000 Genomes Project.
A QC pipeline for SVs calls based on coverage and SNP calls
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