Evolution, genomics, bioinformatics, adaptation, pathogens, crustaceans
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viral-assembly-variant-calling
viral-assembly-variant-calling PublicSnakemake pipeline to assemble a viral consensus sequence, and optionally call SNPs and haplotypes
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ConsIter
ConsIter PublicPython script to generate a reference-guided viral consensus sequence using an iterative mapping and variant calling approach
Python
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Baltic_Lab_Wild
Baltic_Lab_Wild PublicScripts and data associated with "Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod"
R 1
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HPV-genotyping
HPV-genotyping PublicCollection of scripts and commands for analyzing Illumina-sequence-based HPV genotyping data
Shell
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