Find causal cell-types underlying complex trait genetics
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Updated
Oct 4, 2024 - R
Find causal cell-types underlying complex trait genetics
🔖 Get SNP proxies from the 1000 Genomes Project.
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
An Efficient Swiss Army Knife for Population Genomic Analyses in R
🍸R version of SConES, a systems-biology approach to GWAS.
DNA Imputation tool for Generis.
An R package for detecting copy number variants from SNPs data
R scripts & functions for SNP data analysis of genotyping data from Affymetrix Axiom arrays
Principal Component Analysis, PCA, Gaussian Markov Random Fields, Graphical model,
Code for analyzing 16S rRNA and metagenomic data, SNP data, and immune data from pigs.
Automated Validation of CNV calls from SNPs array, plus functions to analyse the results
A QC pipeline for SVs calls based on coverage and SNP calls
ShiNyP: An Interactive Shiny-Based Platform for Genome-Wide SNP Analysis and Visualization
Scripts and data associated with "Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod"
Scripts and config files for assembly and SNP design of genomics of Polynesian rats
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