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May 15, 2017 - Shell
sequence-alignment
Here are 323 public repositories matching this topic...
Perl Implementation of a three different techniques for DNA sequence alignment to calculate similarity between 2 DNA sequences
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Oct 5, 2018 - Perl
Optimal Sequence Aligner allowing for Long Gaps
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May 19, 2020 - C++
Extract NEXUS partition blocks from a collection of concatenated alignments
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Mar 5, 2022 - Rust
Python scripts for performing bioinformatics for small read sequence alignment to reference genomes and SNP marker calling.
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Nov 8, 2023 - Python
A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.
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May 10, 2024 - Clarion
multiple sequence alignment (biological)
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May 21, 2024 - Python
convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
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Apr 21, 2023 - Rust
DNA read mapping (seed-extension-aligner)
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Dec 18, 2017 - C++
Durham University Year 1 assignment to optimise simple sequence alignment scoring in bioinformatics implemented in Python
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Dec 19, 2020 - Python
Sequence Alignment tool
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Mar 24, 2024 - Perl
ColabSeq: The one-stop shop for all of your multiple sequence analysis needs.
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Apr 1, 2024 - Jupyter Notebook
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
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May 4, 2022 - Python
CSCI-570 Analysis Of Algorithms project at USC
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May 19, 2022 - Python
Sequence alignment utilities for bioinformatics applications
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Oct 11, 2022 - Jupyter Notebook
Implementations of DAA Algorithms in various languages
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Apr 3, 2023 - Java
Phylogenetic tree maker for alignment and phylogeny inference. Performs global and local sequence alignments using the Needleman-Wunsch and Smith-Waterman algorithms, followed by tree construction via the Neighbor-Joining method.
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May 26, 2024 - Python
Computational Biology Methods and Research (COMP 561) Course Project
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Dec 29, 2023 - Python
Simple Java code for sequence alignment and scoring, built on top of biojava-alignment.
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Dec 19, 2015 - Java
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