R, Python, and SQL implementations of the Phoenix Sepsis Criteria

Repository for MODS subphenotype preprint, data, and code.

Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.

Shiny app that facilitates access and exploration of manually-curated, published sepsis data.

A living systematic review

Laboratory Diagnostics from Septic and Non-septic Patients Used in the AMPEL Project

Sepsis prediction web app, embedding machine learning model in web app using fast api

Compare and evaluate the effectiveness of various machine learning models and techniques in predicting sepsis

Early Prediction of Sepsis using Time Seiries Forecasting (Published at 2023 IEEE AI4Health)

Baseline to compare the performance of different models with sepsis data from MIMIC-III database

This repository contains a FastAPI that you can use to predict whether a patient has Sepsis or Not.

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

IEEE BIBM 2021: Bayesian optimization-guided topic modeling for automatic detection of sepsis-related events from free text

Predict sepsis using structured data of patients who were admitted to the ICU along with their radiology reports using Deep Learning Models (CNN and LSTM)

Repository for the journal article, 'FedSepsis: A Federated Multi-Modal Deep Learning-Based Internet of Medical Things Application for Early Detection of Sepsis from Electronic Health Records Using Raspberry Pi and Jetson Nano Devices', Mahbub Ul Alam, Rahim Rahmani. Sensors 23, no. 2: 970, https://doi.org/10.3390/s23020970.

The purpose of the project was to investigate how heart rate variability metrics may be used to predict sepsis in preterm infants, and to present this work with an understandable report.

1-D CNN to accurately predict Sepsis using clinical data

Early prediction of sepsis with gradient boosting (XGBoost) and deep learning (LSTM and GRU) using MIMIC-III data.

Integrating genomics and physiologic data (high-frequency) for sepsis detection

This repo showcases the development of an early warning timeseries model that predicts the onset of sepsis "acute infection" in pre-term newborns. The model serves premature infants hospitalized in the Neonatal Intensive Care Unit (NICU), in the Wilhelmina Kinderziekenhuis (WKZ) hospital in Utrecht, Netherlands.