Code for smooth interactions with the salvage database
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Updated
Jul 23, 2024 - HTML
Code for smooth interactions with the salvage database
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
Mise à jour et standardisation des séries chronologiques d'abondance du saumon atlantique sur les cours d'eau de l'ORE DiaPFC
Jupyter notebooks for DGE results and ontology analysis and visualisation.
Development site for an integrated population model for Auke Creek coho salmon
Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
R package for VRAP rewrite
Python client for the CAX API. Holmes, E. E and M. Williams. 2023. pycax: a Python client for the Coordinated Assessments data exchange REST API
Simple Nextflow RNA-Seq pipeline
A general run reconstruction model for the commercial sockeye salmon fishery in Bristol Bay, Alaska. This model leverages information from age and genetic composition samples to apportion mixed-stock catches and account for interception among terminal fishing districts.
CoExp website is a web-based tool developed in .NET Core Framework, for querying 109 independent gene co-expression networks from the family of CoExp R packages.
Differential expression and allelic analysis, nonparametric statistics
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