A collection of Galaxy-related training material

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

A proof of concept of RNAseq pipeline

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

Bioconductor cheat sheet

A proof of concept RNA-Seq pipeline with Nextflow

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

Transcript quantification import for modular pipelines

gatk4 RNA variant calling pipeline

Differential gene expression analysis and pathway analysis of RNAseq data

Fast, efficient RNA-Seq metrics for quality control and process optimization

A course on genomics and bioinformatics from WU

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

Analyze your RNA sequencing data without writing a single line of code

Official Repository of the Oyster River Protocol for Transcriptome Assembly

This RNAseq data analysis tutorial is created for educational purpose