viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
-
Updated
Mar 13, 2024 - Shell
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
A comprehensive pipeline for RNAseq data analysis
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
CrusTome: A transcriptome database resource for large-scale analyses across Crustacea. Repository contains example script, links to database download, and supplementary files from manuscript.
A script used to calculate percent spliced-in (PSI) values from bulk RNA sequencing data.
In development scripts for EvolOMICs group's NGS Data Analysis Pipeline
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
Tutorial for Genotyping by RNA Sequencing (GBRS), which quantifies transcripts via RNASeq and genotypes the samples using SNPs in transcripts.
Run RNASeq analysis with reference genome based on the Tophat-Cufflinks pipeline.
Add a description, image, and links to the rnaseq topic page so that developers can more easily learn about it.
To associate your repository with the rnaseq topic, visit your repo's landing page and select "manage topics."