rnaseq
Here are 18 public repositories matching this topic...
-
Updated
Jan 23, 2020 - Shell
Tutorial for Genotyping by RNA Sequencing (GBRS), which quantifies transcripts via RNASeq and genotypes the samples using SNPs in transcripts.
-
Updated
Sep 24, 2024 - Shell
-
Updated
Oct 15, 2018 - Shell
Run RNASeq analysis with reference genome based on the Tophat-Cufflinks pipeline.
-
Updated
Oct 27, 2018 - Shell
Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
-
Updated
Mar 14, 2024 - Shell
A script used to calculate percent spliced-in (PSI) values from bulk RNA sequencing data.
-
Updated
May 27, 2022 - Shell
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
-
Updated
Aug 28, 2020 - Shell
In development scripts for EvolOMICs group's NGS Data Analysis Pipeline
-
Updated
Apr 19, 2021 - Shell
CrusTome: A transcriptome database resource for large-scale analyses across Crustacea. Repository contains example script, links to database download, and supplementary files from manuscript.
-
Updated
Mar 13, 2023 - Shell
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
-
Updated
Mar 27, 2024 - Shell
A comprehensive pipeline for RNAseq data analysis
-
Updated
Aug 31, 2024 - Shell
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
-
Updated
Mar 13, 2024 - Shell
Improve this page
Add a description, image, and links to the rnaseq topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the rnaseq topic, visit your repo's landing page and select "manage topics."