GTfold is a fast, scalable multicore code for predicting RNA secondary structure and is one to two orders of magnitude faster than the de facto standard programs and achieves comparable accuracy of prediction.

R4RNA visualisation package. Designed for visualization of RNA-RNA interactions and Genomic information from HiC data.

Architecture of Large Projects in Bioinformatics (University project)

Repo for the comradesOO R package. Designed for the analysis of RNA structural data obtained through RNA cross-linking and high-throughput sequencing experiments

Pre-processing pipeline for RNA crosslinking and High throughput sequencing data.

Final Project : Algorithms and Object-Oriented programming. Secodary structure of ARN molecules

Split and decompose structural RNA multiple sequence alignments

Data cleaning and analysis of LASLO results

Solving RNA Folding Problems with Linear/Integer Programming

Bioinformatics Data Structures & Algorithms [such as the Q-Gram Index, scoring alignments , rna-structure prediction, generating the BLAST-Ńeighborhood and more.]

RNA Interaction Format (RIF) with reference implementations in C++, JavaScript, and Python

A JavaFX app to visualize RNA alignments from Rfam database.

🧬 Taller de Decodificación de ARN con Python

PyMOL snippet library is written in Python for use in RStudio via the R reticulate package and the PyMOL Python API.

Extension for creating visualizations of distance restraints in PyRy3D Chimera Extension

Bialignment of RNAs and proteins

Code related to TIsigner manuscript and webserver

Official code of RTM-align: an improved RNA alignment tool with enhanced short sequence performance via post-standardization and fragment alignment.

Visualising RNA-RNA interactions

JavaFX widgets to visualize and manipulate RNA structures.