An R shiny web server for linking of ATAC-seq to gene expression data
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Updated
Jun 25, 2024 - R
An R shiny web server for linking of ATAC-seq to gene expression data
CTKplot is an R package designed to streamline the creation of customized, publication-ready plots frequently used in my lab work for data presentation.
Table of software for the analysis of single-cell RNA-seq data.
Snakemake pipeline to analyze retrotransposable element 'omics data.
Visual self-service analytics platform for big omics data.
single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
FRASER - Find RAre Splicing Events in RNA-seq
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
Bioinformatics Institure semester project
A database and interactive platform for respiratory-associated disease
Single-cell RNAseq materials derived from the 2023 ISMB OSCA workshop in the carpentries workbench format.
NicheNet: predict active ligand-target links between interacting cells
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
Single Cell Genomes with Allele Specificity
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
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