A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
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Updated
Nov 7, 2019 - Nextflow
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
Projet pour le hacktaton reproductible de l'ue ReproHackaton du master AMI2B 2021-2022
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
GATK RNA-Seq Variant Calling in Nextflow
RNA-Seq pipeline
Projet de Hackathon du master AMI2B 2022 - Pipeline d'analyse RNA-Seq écrit en Nextflow
Simple Nextflow RNA-Seq pipeline
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
See the main fork of this repository here >>>
A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.
A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
This nextflow pipeline is for downloading and mapping RNA-Seq data from NCBI for different species
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
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