Image-processing software for cryo-electron microscopy

Utilities to help cryoEM data analysis

Manipulate and mine Relion .star files

example set up for Relion on AWS ParallelCluster for CryoEM

Implementation of a Bayesian approach to cryo-EM structure determination

Software to integrate Relion GUI with Amazon Web Services, accompanied by easy command line tools. Learn more at cryoem-tools.cloud

Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles

Step-by-step instructions for installing an Ubuntu workstation with standard cryo-em software

Python scripts for Relion external job type

A lightweight script to monitor RELION jobs and send information over Slack DMs

Plot the histogram of local resolution values of a cryo-EM reconstruction

RelionReport is a tool which generates a report and animation from a given relion 3DClass, Refine3D or InitialModel job. RelionReport aims to give more meaningful output from relion jobs to aid in making processing decisions and presenting processing data.

helper scripts for Electron microscopy data processing

Software to divide data collected using Leginon into optics groups according to image shift

Plot the class distribution as a function of iteration from a Class2D or Class3D job from RELION

Report the number of particles in each class from a run_data.star file produced by RELION

A tool reading IMOD points, obtaining particles' info and generating .star file for RELION

Sbatch scripts for submitting cryo-EM jobs on Stanford's Sherlock compute cluster.

Subtomogram Averaging using Dynamo, imod, Relion and MatLab

Split relion star files by tomogram or Warp directory.