🦀 Fqkit: A simple and cross-platform program for fastq file manipulation
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Updated
Jul 18, 2024 - Rust
🦀 Fqkit: A simple and cross-platform program for fastq file manipulation
A Guide to Automatically Downloading NCBI SRA Reads
R functions and workflow for submitting amplicon sequence data to the ENA.
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Study material (pdfs, notes, free course download links etc) for HACKERS
Genome read alignments visualizer
Ancient DNA Read Simulator for Metagenomic
Standalone tool and library allowing to work with barcoded linked-reads
Collection of blogs/publications by Nepali devs.
hierarchical clustering of DNA sequence using upcxx
Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
A tool to index and extract data from gzipped FASTQ files
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …
Python code to detect ECGR Mutations; Takes a reference genome and bunch of reads as input and finds mutations (1-3 bp length) where number of supporting reads greater than 5
Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads
A Raspberry Pi Simple python Stand Alone Local Network Web Server. Automatically reads folder and file entries into a right pane selection list. Selected folder opens a new browser tab and Selected file displays content in browser left pane iframe. Right pane list can be ordered by date/time or alphabetic ascending or descending via settings.py …
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