A fully reproducible and state-of-the-art ancient DNA analysis pipeline
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Updated
Aug 16, 2024 - Nextflow
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Coprolite host Identification pipeline
The mitochondrial workbench
Ancient DNA Read Simulator for Metagenomic
R Package - Spatiotemporal Ancestry Interpolation and Search
🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
Research compendium for ‘Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data’; If you want to perform spatio-temporal similary search with the mobest R package as presented in the paper, then you can directly check the documentation here: https://nevrome.de/mobest
Estimation of natural selection and allele age from time series allele frequency data using a novel likelihood-based approach
A realistic-ish aDNA simulator
Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis
Detecting and quantifying natural selection at two linked loci from time series data of allele frequencies with forward-in-time simulations
Estimating temporally variable selection intensity from ancient DNA data
Estimating temporally variable selection intensity from ancient DNA data with a combination of forward- and backward-in-time simulations
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