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A Raspberry Pi Simple python Stand Alone Local Network Web Server. Automatically reads folder and file entries into a right pane selection list. Selected folder opens a new browser tab and Selected file displays content in browser left pane iframe. Right pane list can be ordered by date/time or alphabetic ascending or descending via settings.py …
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …
Python code to detect ECGR Mutations; Takes a reference genome and bunch of reads as input and finds mutations (1-3 bp length) where number of supporting reads greater than 5