📋 A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
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Updated
Sep 4, 2024 - Python
📋 A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
NLP framework in python for entity recognition and relationship extraction
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
A framework for keeping biomedical text mining result up-to-date
Open Access PDF harvester
A tool for harvesting media files from Open Access articles for upload into Wikimedia Commons
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
MediaWiki bot to upload content to Wikimedia projects and update corresponding citations on Wikipedia.
The aim of this project is to use the text from biomedical and life science literature to gain insights on research topic trends over time.
Repository of our paper on Self-citation analysis in PubMed data
Batch downloads full-text PDFs (or any other soruces) from PubmedCentral OA articles
A pipeline for inferring gender for acknowledged individuals in scientific literature on a massive scale
Citation.js plugin to output QuickStatements
A library that facilitates the process of building a machine learning pipeline using PubMed as a data source
ScrapeMed: Data scraping for PubMed Central.
Extract figures and figure captions from PMC open access papers
This is an upgraded version of the original snorkeling project.
This script reads the exported (.csv|.txt) files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish databases and turns each of them into a new file with an unique format. This script will ignore duplicated records.
PubMed Central browser
Citation.js plugin for PubMed and PubMed Central identifiers
Add a description, image, and links to the pubmed-central topic page so that developers can more easily learn about it.
To associate your repository with the pubmed-central topic, visit your repo's landing page and select "manage topics."