JensUweUlrich / Taxor Star 30 Code Issues Pull requests Fast and space-efficient taxonomic classification of long reads bioinformatics taxonomy metagenomics long-read microbiome kmer em-algorithm taxonomic-classification refseq bioinf long-read-sequencing xor-filter taxonomic-profiling syncmer pseudo-alignment interleaved-xor-filter Updated Jul 19, 2024 C++
BimberLab / nimble Star 1 Code Issues Pull requests nimble — execute lightweight, flexible alignments on arbitrary reference libraries python rust fast rna-seq bio multiplatform 10x nimble aligner pseudo-alignment Updated Jul 16, 2024 Python
BimberLab / nimble-aligner Star 1 Code Issues Pull requests nimble-aligner is the backend for nimble, a tool that executes lightweight, flexible alignments to generate supplemental alignment data rust fast rna-seq bio alignment multiplatform nimble rust-bio pseudo-alignment ohsu-vgti Updated Jul 21, 2024 Rust