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ppi-networks

Here are 9 public repositories matching this topic...

sevmardi / Protein-Protein-Networks

Evaluate a strategy for predicting cancer-related proteins in PPI networks.

prediction python-3 ppi ppi-networks

Updated Jan 29, 2018
Python

sysbiolux / MD_network_map

paper ppi-networks

Updated Mar 26, 2020
Python

paulmorio / protclus

Python 3 library implementing a number of topological clustering techniques used on protein-protein interaction networks.

clustering ppi-networks

Updated Nov 29, 2020
Python

chao1224 / SGNN-EBM

Structured Multi-task Learning for Molecular Property Prediction, AISTATS'22 (https://proceedings.mlr.press/v151/liu22e.html)

string molecule knowledge-graph chembl energy-based-model ppi-networks multitask-learning chembl-string

Updated Jul 6, 2022
Python

pulimeng / CancerOmicsNet

A Graph Neural Network Model for prediction of the effectiveness of a drug on a given cancer cell lines

systems-biology cancer-genomics drug-discovery ppi-networks graph-neural-network

Updated Apr 3, 2023
Python

pulimeng / Biology-Network-Reduction

Graph representation for system biology networks and the reduction of them for machine learning purposes

systemsbiology ppi-networks

Updated Apr 11, 2023
Python

ylaboratory / ETNA

Embeddings to Network Alignment - align biological networks between two species

computational-biology network-alignment bioinformatics-tool ppi-networks protein-protein-interaction-network

Updated Sep 8, 2023
Python

pievos101 / Ensemble-GNN

Ensemble learning with graph neural networks for disease module discovery and classification

ensemble-learning ppi-networks graph-neural-networks

Updated Nov 5, 2023
Python

LirongWu / MAPE-PPI

Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

vocabulary protein-protein-interaction codebook ppi-networks protein-embedding protein-representation-learning microenvironment masked-modeling

Updated Jun 20, 2024
Python

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