edgardomortiz / vcf2phylip Star 277 Code Issues Pull requests Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis snps binary nexus vcf phylogenetics alignment fasta snapp phylip vcf-files polyploid haploid phylogenetic-analysis outgroup convert-snps vcf-format phylip-matrix diploid Updated Jul 7, 2023 Python
OmarOakheart / nPhase Star 40 Code Issues Pull requests Ploidy agnostic phasing pipeline and algorithm bioinformatics bioinformatics-pipeline phasing polyploid Updated Jan 3, 2024 Python
wangyibin / collapse_rescue Star 2 Code Issues Pull requests Method for rescuing collapsed contigs. genomics hi-c genome-assembly genome-scaffolding polyploid Updated Jul 26, 2022 Python
pblischak / fluidigm2purc Star 0 Code Issues Pull requests Automated processing and haplotype inference for double-barcoded PCR amplicons high-throughput-sequencing phylogenomics fluidigm polyploid Updated Feb 5, 2019 Python
DomBennett / Project-cluster Star 0 Code Issues Pull requests 🌺 Short pipeline for counting number of clusters across .sam files pipeline clustering polyploid cdhit Updated May 7, 2018 Python