peptides
Here are 98 public repositories matching this topic...
🧬 Toolkit for generating various numerical features of protein sequences
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Jul 21, 2024 - R
pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo. For an up-to-date API documention please check our website:
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Jul 18, 2024 - Python
Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides in the Top8000 PDB data set.
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Jul 16, 2024 - Python
The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
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Jul 13, 2024 - R
Python framework for Deep Learning in Proteomics
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Jul 25, 2024 - Python
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
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Jul 3, 2024 - Python
Collisional cross-section prediction for modified peptides
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Jul 19, 2024 - Python
Identify and quantify MHC eluted peptides from mass spectrometry raw data
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Jun 17, 2024 - Nextflow
A user friendly system for molecular dynamics in both aqueous and membrane-like environment.
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Jun 14, 2024 - Jupyter Notebook
Proteomics Mass Spectrometry Datasets for Machine Learning
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Jul 25, 2024 - Python
A spectacularly simple package for working with peptide sequences.
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Jun 3, 2024 - Python
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Jun 2, 2024 - R
A light-weight FASTA reader and parser
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May 21, 2024 - R
R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
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May 3, 2024 - R
A lightweight package for predicting peptide fragment mass values
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Apr 29, 2024 - Rust
Fast regex-based protein digestion and unique peptides finder tool
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Apr 27, 2024 - Python
playing with (therapeutic) peptide data
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Apr 23, 2024 - Python
Masked peptides for low-data peptide drug discovery (BiB 2023)
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Apr 12, 2024 - Jupyter Notebook
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