tiagofilipe12 / pATLASflow Star 2 Code Issues Pull requests A pipeline to run mapping, mash screen and assembly methods for pATLAS. pipeline nextflow samtools mash bowtie2 patlas Updated Jan 4, 2019 Python
tiagofilipe12 / PlasmidCoverage Star 1 Code Issues Pull requests Script to obtain plasmid id from WGS data using bowtie2 to map samtools bowtie2 plasmids patlas Updated Sep 8, 2018 Python
tiagofilipe12 / mash_wrapper Star 0 Code Issues Pull requests This script runs MASH given a set of reads against specified references. plasmid mash patlas Updated Sep 8, 2018 Python