AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
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Updated
Jul 7, 2022 - Python
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
Disease pathways in the human interactome
Explore biomolecular pathways in Reactome from the command-line or a Python script
Harmonizing pathway databases using Biological Expression Language (BEL)
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
VEGA: VAE Enhanced by Gene Annotations
A Python package for benchmarking pathway database with functional enrichment and classification methods
A python library for programmatic usage of EBI InterPro Genome Properties.
Overrepresentation analysis for KEGG and PID pathways using community detection
Testing, development environment for a new project of KN BIBS
Integration of pathway-related information from MSigDB in BEL
A web application for visualizing and exploring the consensus across pathway enrichment results
A wrapper around Bio2BEL HGNC for ComPath
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
Snakemake pipeline to benchmark 11 functional pathway annotation systems
Constellab brick for genome-scale metabolic modelling
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