chasewnelson / OLGenie Star 12 Code Issues Pull requests Program for estimating dN/dS in overlapping genes (OLGs) perl selection overlapping dnds-estimation molecular-evolution positive-selection dnds natural-selection nei-gojobori overlapping-genes purifying-selection neutral-evolution Updated Dec 2, 2022 Perl
chasewnelson / SARS-CoV-2-ORF3d Star 5 Code Issues Pull requests Supplementary scripts for Nelson et al. (2020) paper on ORF3d python r perl biopython overlapping-genes within-host covid-19 sars-cov-2 orf3d olgenie snpgenie between-host Updated Nov 5, 2020 R
gabriel-ferreras / ChipSeqPipeline Star 3 Code Issues Pull requests Bash, SGE and R pipeline for Chip-Seq data processing and analysis. chip-seq peak overlapping-genes transcript-factor kegg-terms Updated Feb 19, 2021 R
gabriel-ferreras / ChipSeqPipelineNoSGE Star 2 Code Issues Pull requests Bash and R pipeline for Chip-Seq data processing and analysis. chip-seq peak overlapping-genes go-terms transcript-factor kegg-terms Updated Feb 19, 2021 R
chiarabales / geneset_SV Star 2 Code Issues Pull requests Reference implementation of the paper Redundancy-aware unsupervised ranking based on game theory - application to gene enrichment analysis gene-sets game-theory pathways overlapping-genes shapley-values unsupervised-feature-selection redundancy-reduction Updated Dec 23, 2022 Python