WtP: Phage identification via nextflow and docker or singularity
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Updated
Feb 20, 2024 - Nextflow
WtP: Phage identification via nextflow and docker or singularity
RNA-Seq pipeline
This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filtering etc...) of IGSR data
From QC to summary statistics
Chip-Seq pipeline
A simple fastp-MultiQC nextflow pipeline
Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
A Genome Annotation workflow for Eukaryotes
Atac-Seq pipeline
This workflow for molecular dynamics simulation of proteins
A repository with usage examples of various pipeline and workflow orchestration tools
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
Demultiplexing pipeline for sequencing data
modules for processing and analyzing single cell data using Nextflow
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and isolate clustering based on NCBI Pathogen Detection Project for Cronobacter.
Scripts for ARIBA-based gene detection
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