WtP: Phage identification via nextflow and docker or singularity
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Updated
Jul 31, 2024 - Nextflow
WtP: Phage identification via nextflow and docker or singularity
Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
A simple fastp-MultiQC nextflow pipeline
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
RNA-Seq pipeline
cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and isolate clustering based on NCBI Pathogen Detection Project for Cronobacter.
modules for processing and analyzing single cell data using Nextflow
This repo contains pipeline implemented using the nextflow workflow management system for the analysis of genomics data
Atac-Seq pipeline
A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.
A nextflow workflow to build referenceseeker DBs on the fly
A Genome Annotation workflow for Eukaryotes
Nextflow pipeline to assemble genomes from nanopore reads.
Chip-Seq pipeline
A simple pipeline to test some basic nextflow features.
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