Brain Modeling Toolkit
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Updated
Jul 8, 2024 - Python
Brain Modeling Toolkit
Tools for creating full TVB models from individual anatomical scans
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
Research data management in biomedical and machine learning applications
Numerical solver for coupled population density equations
Database for experimental neuroscience laboratories
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
Generalized Correspondence LDA (Python implementation). Deprecated in favor of NiMARE.
Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).
PyPi Package of Self-Organizing Recurrent Neural Networks (SORN) and Neuro-robotics using OpenAI Gym
Ontologized versions of the ABA structureGraphs - with mappings to Uberon
Python GUI to Map fMRI ICA probability/t-value maps to known networks (e.g. resting state networks).
This project focus on sleep spindles searching in filtered EEG signal.
A package to export events using log files from presentation software.
Deep-Learning Based Automated Neuron Reconstruction from 3D Microscopy Images Using Synthetic Training Images
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
In order to accelerate progress in cohort studies, we proposed a hierarchical neuroscience knowledge base consisting of projects/organizations, multi-modal databases and toolkits, and take the information object in Frontiers in Neuroscience as a example input. Meanwhile, we developed and open sourced the query tool, PDT_fninf , so that researche…
A toolkit for detecting and tracking crabs in the field.
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