TRON-Bioinformatics / neofox Star 26 Code Issues Pull requests Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors bioinformatics immunogenomics immunogenicity-prediction cancer-immunology netmhciipan netmhcpan neoantigen-annotation neoantigens Updated Jul 31, 2024 Python
ylab-hi / ScanNeo2 Star 11 Code Issues Pull requests Discussions Snakemake-based computational workflow for neoantigen prediction from diverse sources snakemake gene-fusion indels peptide snakemake-workflow splicing epitope neoantigens exitron neoepitope Updated Aug 20, 2024 Python
jfnavarro / hla_pipeline Star 10 Code Issues Pull requests DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions dna rna mhc wgs hla wes neoantigens Updated Jul 8, 2021 Python