abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
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Updated
Jul 25, 2024 - C
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
A Julia package to analyze protein sequences, structures, and evolutionary information
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
🧬ReAlign-N: an integrated realignment approach for multiple nucleic acid sequence alignment, combining global and local realignments
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Making Protein folding accessible to all!
Generation of protein sequences and evolutionary alignments via discrete diffusion models
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Library-free horizontal transfer detection, with a focus on transposable element invasions
Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms
🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
Python tool for relative mutation rate of different genes across viral strains.
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
Enhancements to Biopython for working with biological data
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