The project aims to study the genome, transcriptome, epigenome of FL, to rigorously define and validate molecular subtypes by unravelling inter- and intra-patient heterogeneity.
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Updated
Aug 6, 2024 - R
The project aims to study the genome, transcriptome, epigenome of FL, to rigorously define and validate molecular subtypes by unravelling inter- and intra-patient heterogeneity.
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
This package provides Illumina Mouse Methylation Array Manifest (12.v1, Genome Build mm10) compatible with minfi.
Missing value imputation in methylation data R package
DNA methylation analysis pipeline for reduced representation bissulfite sequencing data
Methylation and mqtl analysis of the developing knee
DecoFlex deconvolution method for Omic data implemented as DecoFlexR
💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center …
A Snakemake workflow to analyse Illumina methylation arrays
R package for DNA methylation analysis
CimpleG, an R package to find (small) CpG signatures.
IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context
Differentially methylated regions analysis
Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target genes
CytoMeth tool compiles a set of open source software named in the Roche pipeline guidelines to perform SeqCap Epi data analysis.
Correction of batch effects in DNA methylation data
Correction of batch effects with BEclear as a command line tool
Bioinformatics Pipeline
A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.
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