Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae
GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".
Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutrients and the objective function. As published in Metabolites https://doi.org/10.3390/metabo11050257
Genome-scale metabolic reconstruction of Rhizophagus irregularis
Memote-created repository for Rhodosporidium toruloides model iRhto
Platform for further development of the Arabidopsis core metabolic model
Repository of a genome-scale metabolic model for Saccharomyces cerevisiae
Integration of temperature-dependent constraints into a metabolic model of Arabidopsis thaliana
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