Detailed bioinformatics scripts and methods used in the NAM genome paper.

Coctohug - Manage dozens of chia forks mining from a web browser! Nice localization with support of dozens of languages. Runs on Linux, Windows, MacOS, and more...

Workflow to construct linear representation of pan genome from deep WGS data and public assemblies

ROS package to procedural generate randomized fields with rows of plants for Gazebo

Structure variants calling and genotyping scripts for pan-Zea

the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics

A repo contains historical and updated MTEC libraries.

Characterization of 3D plant development for graminae crops

A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines

Code for "Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment trials" (Fernandes et. al 2024)

The repository for codes developed to generated the Maize NC358 assemblies and analyses.

The project aims to classify different leaves of crops as disease infected or healthy from its image based on previously calculated average infection percentage of data set of particular disease of a crop.

An imaging library to detect and track future position of ears on maize plants

Phenotyping Maize over time

Synthesizing and visualizing the impact of conservation agriculture

bioinformatic utility libraries in python

cropDiffusionR: Exploring the Diffusion of Agricultural Crops

Spread Processes and Rates behind Maize Agriculture

Genome-wide association analysis of phenotypic plasticity in the maize nested association mapping population

Multimodal data fusion for maize phenotype prediction across environments