A metagenome assembly and evaluation pipeline, focused on hi-fi long reads, but with support for lo-fi long reads and hybrid assemblies
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Updated
Oct 20, 2023 - Python
A metagenome assembly and evaluation pipeline, focused on hi-fi long reads, but with support for lo-fi long reads and hybrid assemblies
Target site duplication assessment from alignment file and genomic location of insertion sites.
Documentation for running microPIPE at Pawsey
Assembly of chloroplast genome using long-reads and short-reads for Genomics Course 2021 (MSc Bioinformatics for Computational Genomics)
Tool to analyze chromatin accessibility with long read sequencing technologies
Elloreas, a genome assembler
Long Reads Mapping Algorithms
Improved Phased Assembler: structured documentation and results of testing for Australian compute infrastructures
Synthetically Engineered Wastewater sequence data for Assessing Genomic Entities
A flexible complex genome rearrangement simulator for short and long reads
A small example to test DENTIST's workflow
Evolutionary genomics of chromosomal inversions in Atlantic herring
Annotate MEI in a VCF file containing sequence-resolved structural variation calls
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Adapter+Barcode trimming from Pacbio HiFi reads
Studies structural variant callers on large simulated populations sequenced with PacBio CCS
Canu: structured documentation and results of testing / optimisation for Australian compute infrastructures
Mitochondrial Long-read Iterative Assembly
A short tandem repeat (STR) genotyping and analysis toolkit for long reads
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