🚂 Python API for Emma's Markov Model Algorithms 🚂
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Updated
Sep 11, 2023 - Python
🚂 Python API for Emma's Markov Model Algorithms 🚂
The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code for designing radiofrequency (RF) pulses, imaging gradients, data reconstruction, and data analysis. doi: 10.5281/zenodo.1198915
Advanced Multilanguage Interface to CVODES and IDAS
ARC - Automatic Rate Calculator
Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
Modeling molecular ensembles with scalable data structures and parallel computing
A Python Framework for Modeling and Analysis of Signaling Systems
Metabolic Engineering Workbench
The official PySCeS project source code repository.
StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations
Patient-Specific Modeling in Python
GORILLA: Guiding-center ORbit Integration with Local Linearization Approach
Rule-based modeling for whole-cell models.
Automatic-Differentiation-Enabled Plasma Transport in JAX
IsoSim: stoichiometric, kinetic and isotopic modeling of metabolic systems
Aa free expandable Python package for building and analysing dynamic mathematical models of biological systems.
Automatic descriptor selection and volcano curve generation
Perform identifiability analysis in small kinetic models for experimental design using steady state fluxes and concentrations.
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