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@KarrLab

Karr whole-cell modeling lab

Developing whole-cell computational models to predict and engineer biology.

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  1. de_sim de_sim Public

    Python-based object-oriented discrete-event simulation tool for complex, data-driven modeling

    Python 30 6

  2. latex-grant latex-grant Public

    LaTeX classes for formatting scientific documents, including US federal grant proposals.

    TeX 23 9

  3. intro_to_wc_modeling intro_to_wc_modeling Public

    Whole-cell modeling tutorials

    Python 16 5

  4. gdoc_down gdoc_down Public

    Command line programs to save Google documents to text and LaTeX files

    Python 15 2

  5. datanator datanator Public

    Toolkit for discovering and aggregating data for whole-cell modeling

    Python 15 4

  6. wc_lang wc_lang Public

    Language for describing whole-cell models as reaction networks

    Python 9 3

Repositories

Showing 10 of 64 repositories
  • datanator_rest_api Public

    A OAS3 compliant REST API for the Datanator integrated database

    KarrLab/datanator_rest_api’s past year of commit activity
    Python 0 MIT 3 7 1 Updated Oct 18, 2022
  • wc_rules Public

    Rule-based modeling for whole-cell models.

    KarrLab/wc_rules’s past year of commit activity
    Python 9 MIT 3 1 0 Updated May 20, 2022
  • wc_utils Public

    Utilities for whole-cell modeling such as logging, plotting, managing git repos, random number generation and others

    KarrLab/wc_utils’s past year of commit activity
    Python 1 MIT 1 5 0 Updated Apr 29, 2022
  • datanator Public

    Toolkit for discovering and aggregating data for whole-cell modeling

    KarrLab/datanator’s past year of commit activity
    Python 15 MIT 4 7 0 Updated Jan 19, 2022
  • karr_lab_website Public

    Code for the Karr Lab website

    KarrLab/karr_lab_website’s past year of commit activity
    HTML 0 MIT 0 1 1 Updated Nov 24, 2021
  • Cell_model Public Forked from JustKong13/Cell_model

    FBA Cell Modeling Project

    KarrLab/Cell_model’s past year of commit activity
    Python 0 2 0 0 Updated Aug 13, 2021
  • wc_kb Public

    Tools for building databases of experimental data for constructing whole-cell models

    KarrLab/wc_kb’s past year of commit activity
    Python 3 MIT 5 12 0 Updated Jul 8, 2021
  • wc_model_gen Public

    Framework for systematically and scalably designing whole-cell models from large datasets

    KarrLab/wc_model_gen’s past year of commit activity
    Python 5 MIT 2 9 0 Updated Jul 6, 2021
  • obj_tables Public

    Tools for creating and reusing high-quality spreadsheets

    KarrLab/obj_tables’s past year of commit activity
    Python 8 MIT 2 25 0 Updated Jun 14, 2021
  • wc_kb_gen Public

    Framework for constructing knowledge bases for whole-cell models

    KarrLab/wc_kb_gen’s past year of commit activity
    Python 0 MIT 0 4 0 Updated Jun 13, 2021
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