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Sep 11, 2018 - Shell
kallisto
Here are 41 public repositories matching this topic...
Differential gene expression analysis of Nannochloropsis oceanica growth with or without beneficial/harmful bacteria.
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Jun 30, 2022 - Roff
kallisto indexing and tag extraction
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Jul 12, 2019 - Python
Library & executable for converting Themisto pseudoalignments to kallisto pseudoalignments.
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Aug 20, 2024 - C++
GenePattern Notebook running Kallisto
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Jun 15, 2023 - Jupyter Notebook
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
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Jul 24, 2022
Pipeline for analysing differential isoforms in fetal and adult cardiac fibroblasts
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Dec 3, 2020 - R
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
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Feb 16, 2022 - HTML
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Jun 24, 2021 - WDL
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Nov 7, 2019 - Python
kallisto task for RNA-seq workflow
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May 20, 2020 - Kotlin
Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.
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Feb 9, 2024 - Shell
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