Fortran implementation of the Krylov-FSP-SSA algorithm for solving the Chemical Master Equation.
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Updated
Jul 29, 2021 - Fortran
Fortran implementation of the Krylov-FSP-SSA algorithm for solving the Chemical Master Equation.
Final Project for a Mathematical Biology course
Gillespie simulations of advantageous drivers & deleterious passengers in cancer
Stochastic simulation of CRISPR nucleases cleaving a pool of DNA or RNA
Implementation of TASEP with reinitiation and particles of arbitrary size.
Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics
Models for Biochemical and Biophysical Research Communications manuscript
This repository contains code for simulatuing 'miRNA-mediated negative feedback loop' model, given in the manuscript 'Effects of miRNA-mediated negative feedback on gene expression', using Gillespie algorithm
Scalable stochastic simulation of chemical networks
A simulation of the propagation of a virus using the Gillespie algorithm
A collection of some handy utilities
Gillespie Codes on Lattices in C++
Implementation of Gillespie Stochastic Simulation Algorithm
Computational modeling practical exercises.
Network approach to simulate epidemic infection in a bus - station system
Delay Gillespie Degrade and Fire with variable delay
Code to simulate a stochastic system using the Gillespie algorithm with comparisons to the mean field model and steady state analysis.
Code and reading materials related to my BIOL0044 MSci Investigative Project at the Lane Origins lab.
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