gff
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AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. AgroLD ETL is the Python packages developed to transform plant datasets in RDF. Packages are developped for data standards such as GFF,GAF, VCF and specific plant databases.
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Jun 19, 2024 - Python
Another Gtf/Gff Analysis Toolkit
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Jun 6, 2024 - Perl
A genome visualization python package for comparative genomics
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May 26, 2024 - Python
This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.
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May 23, 2024 - Python
RNAseq pipeline for alternative splicing junctions
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Apr 2, 2024 - R
Python programs for processing GFF3 files
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Mar 27, 2024 - Python
Fastest GTF/GFF-to-BED converter chilling around
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Mar 27, 2024 - Rust
💻 Interconverting FASTA, GFF, and CSV.
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Mar 19, 2024 - Python
GTF/GFF per gene non-overlapping exon length calculator
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Jan 2, 2024 - Rust
convert various features into a GFF-like file for use in genome browsers
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Nov 23, 2023 - Python
Same species annotation lift over pipeline.
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Jul 21, 2023 - Ruby
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
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May 7, 2023 - Python
This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
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Mar 2, 2023 - C++
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