Another Gtf/Gff Analysis Toolkit
-
Updated
Sep 27, 2024 - Perl
Another Gtf/Gff Analysis Toolkit
Same species annotation lift over pipeline.
Python programs for processing GFF3 files
convert various features into a GFF-like file for use in genome browsers
A genome visualization python package for comparative genomics
command lines tool to annotate miRNAs with a standard mirna/isomir naming
scripts for RNA-Seq analysis
RNAseq pipeline for alternative splicing junctions
This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
Convert sequence IDs between ucsc/refseq/genbank
Efficiently keep track of changes to genomes
The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.
Evolutionary Bioinformatics Toolkit (EBT)
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
Convert genome annotation GTF file into plain CSV format
Semantically Interoperable Genome Annotations
Add a description, image, and links to the gff topic page so that developers can more easily learn about it.
To associate your repository with the gff topic, visit your repo's landing page and select "manage topics."